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GROMACS container#65

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tonykew wants to merge 31 commits intoubccr:mainfrom
tonykew:GROMACS
Open

GROMACS container#65
tonykew wants to merge 31 commits intoubccr:mainfrom
tonykew:GROMACS

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@tonykew tonykew commented Mar 9, 2026

Instructions on using Nvidia's GROMACS container at CCR
Tested on all the GPU types in "ub-hpc" successfully

Note: nvidia only compiled (this comtainer version of) GROMACS for
compute capability 6.0 though 9.0 so the container image does NOT
work on the GB10 in dev.

Titles, axis lables etc. now match the reference images where
possible.

Tony
Tony
grace/xmgrace container build instructions
slurm_nvidia_GROMACS_long_example.bash added
EXAMPLES.md fixes

Tony
Moved input files to the ./inputs/ sub directory
Added all the input files (that are otherwise downloaded.)

Sundry typos fixed.

long Slurm scripts tested on x86_64 and ARM64

Tony
Note that menue option numbers for different versions of GROMACS for
some commands vary.  Fixed the option numnbers to match the current
version in nvidia's GROMACS container.

Smaller updated and fixes for other files.

Tony
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